2021 Speakers

Dunja Leljak Levanic

Speaker at Plant Biology and Biotechnology 2021 - Dunja Leljak Levanic
Faculty of Science University of Zagreb, Croatia (Hrvatska)
Title : A novel ubiquitin-independent role of MATH-BTB protein family in RNA-directed DNA methylation

Abstract:

MATH-BTB protein family is encoded by the genomes of nearly all eukaryotes. The best known function of MATH BTB proteins is their role as substrate-specific adaptors of cullin3-based E3 ligases in the ubiquitin proteasome pathway. BTB domain enables assembly with the cullin while less conserved MATH domain serves as an adaptor and binds substrates destined for degradation via 26S proteasome. The know downstream targets for functionally described MATH-BTB proteins are a cytoskeletal protein katanin for ZmMAB1, eukaryotic translation initiation factors for TaMAB2 while Arabidopsis BPM1 interacts and modulate the turnover of a distinct TFs. Earlier results showed that BPM1 predominantly localizes in nucleus indicating cullin independent function of BPM1. Co immunoprecipitation and mass spectrometry revealed interaction of
BPM1 with DMS3 and RDM1, key components of RNA-directed DNA methylation (RdDM). However, exact role of BPM1 interaction with DMS3 and RDM1 and possible implications for RdDM pathway remain unknown. To furthermore elucidate putative role of BPM1 protein in RdDM yeast two hybrid and pull down assays were used to confirm direct interactions of BPM1 with DMS3 and RDM1. Additionally, role of MATH and BTB domain in the interaction with DMS3 and RDM1 was tested using truncated version of BPM1 protein with a single domain deletion. The results showed that BTB domain had higher affinity for interaction with RDM1, while both MATH and BTB domains appear to be equally important for interaction with DMS3. In addition, co-localization assay showed overlap of BPM1 and RdDM components while overexpression of BPM1 revealed change in DNA methylation pattern. These results indicate a novel, cullin-independent role of BPM1 protein in RNA-directed DNA methylation pathway. Several DNA sites where transcription or RdDM methylation could be influenced by BPM1 protein determined by ChIP will be analysed for expression and methylation pattern.

Take Away Note:
• The audience will get an introduction to the process of RNA directed DNA Methylation (RdDM), which is a plant specific
mechanism that has to be included in courses of Plant Developmental Biology
• The newly discovered role of BPM protein family will be presented
• The audience will learn about new potential link in a cobweb of methylation regulation
• Newly obtained knowledge the audience will be able to implement when investigating balance between DNA methylation
and transcription

Biography:

MATH-BTB protein family is encoded by the genomes of nearly all eukaryotes.  The best?known function of MATH?BTB proteins is their role as substrate-specific adaptors of cullin3-based E3 ligases in the ubiquitin?proteasome pathway. BTB domain enables assembly with the cullin while less conserved MATH domain serves as an adaptor and binds substrates destined for degradation via 26S proteasome. The know downstream targets for functionally described MATH-BTB proteins are  a cytoskeletal protein katanin for ZmMAB1, eukaryotic translation initiation factors for TaMAB2 while Arabidopsis BPM1 interacts and modulate the turnover of a distinct TFs. Earlier results showed that BPM1 predominantly localizes in nucleus indicating cullin independent function of BPM1. Co?immunoprecipitation and mass spectrometry revealed interaction of BPM1 with DMS3 and RDM1, key components of RNA-directed DNA methylation (RdDM). However, exact role of BPM1 interaction with DMS3 and RDM1 and possible implications for RdDM pathway remain unknown. To furthermore elucidate putative role of BPM1 protein in RdDM yeast two hybrid and pull down assays were used to confirm direct interactions of BPM1 with DMS3 and RDM1. Additionally, role of MATH and BTB domain in the interaction with DMS3 and RDM1 was tested using truncated version of BPM1 protein with a single domain deletion. The results showed that BTB domain had higher affinity for interaction with RDM1, while both MATH and BTB domains appear to be equally important for interaction with DMS3. In addition, co-localization assay showed overlap of BPM1 and RdDM components while overexpression of BPM1 revealed change in DNA methylation pattern. These results indicate a novel, cullin-independent role of BPM1 protein in RNA-directed DNA methylation pathway. Several DNA sites where transcription or RdDM methylation could be influenced by BPM1 protein determined by ChIP will be analysed for expression and methylation pattern.

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